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  • Negative cofitness for CSW01_12815 from Vibrio cholerae E7946 ATCC 55056

    RNA polymerase sigma-54 factor
    SEED: RNA polymerase sigma-54 factor RpoN
    KEGG: RNA polymerase sigma-54 factor

    Computing cofitness values with 45 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 CSW01_03655 murein transglycosylase -0.61
    2 CSW01_03780 polyphosphate kinase 1 -0.55
    3 CSW01_03830 isocitrate lyase -0.54
    4 CSW01_09905 long-chain-fatty-acid--CoA ligase FadD -0.51
    5 CSW01_01970 MBL fold metallo-hydrolase -0.47
    6 CSW01_18300 LysR family transcriptional regulator -0.46
    7 CSW01_03625 DNA-binding response regulator -0.46
    8 CSW01_03670 biofilm architecture maintenance protein MbaA -0.45
    9 CSW01_03665 non-canonical purine NTP phosphatase -0.45
    10 CSW01_12575 transcriptional regulator LeuO -0.44
    11 CSW01_02060 methionine synthase -0.43
    12 CSW01_00680 Cof-type HAD-IIB family hydrolase -0.42
    13 CSW01_06100 histidine utilization repressor -0.41
    14 CSW01_06430 ABC transporter substrate-binding protein -0.41
    15 CSW01_03630 sensor histidine kinase -0.41
    16 CSW01_02070 alanine--glyoxylate aminotransferase family protein -0.41
    17 CSW01_04655 HTH-type transcriptional regulator TreR -0.40
    18 CSW01_17970 ABC transporter -0.40
    19 CSW01_00665 DTW domain-containing protein -0.38
    20 CSW01_00790 vitamin B12 transporter BtuB -0.38

    Or look for positive cofitness