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  • Negative cofitness for Shew_3420 from Shewanella loihica PV-4

    integral membrane sensor signal transduction histidine kinase (RefSeq)
    SEED: Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-)

    Computing cofitness values with 160 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 Shew_3490 XRE family transcriptional regulator (RefSeq) -0.40
    2 Shew_2481 porin (RefSeq) -0.34
    3 Shew_3020 hypothetical protein (RefSeq) -0.34
    4 Shew_2283 porin (RefSeq) -0.34
    5 Shew_3504 TPR repeat-containing protein (RefSeq) -0.32
    6 Shew_3037 alpha-L-glutamate ligase (RefSeq) -0.32
    7 Shew_2813 phosphopentomutase (RefSeq) -0.32
    8 Shew_3554 glnA glutamine synthetase (RefSeq) -0.31
    9 Shew_3789 ABC-type nitrate/sulfonate/bicarbonate transport system protein (RefSeq) -0.30
    10 Shew_1951 aromatic amino acid aminotransferase (RefSeq) -0.30
    11 Shew_2261 YciI-like protein (RefSeq) -0.30
    12 Shew_1822 aconitate hydratase (RefSeq) -0.30
    13 Shew_0676 putative lipoprotein (RefSeq) -0.30
    14 Shew_1823 putative AcnD-accessory protein PrpF (RefSeq) -0.30
    15 Shew_0939 leucyl aminopeptidase (RefSeq) -0.29
    16 Shew_2444 hypothetical protein (RefSeq) -0.29
    17 Shew_2637 PII uridylyl-transferase (RefSeq) -0.29
    18 Shew_1224 sodium:dicarboxylate symporter (RefSeq) -0.29
    19 Shew_2787 peptidase U32 (RefSeq) -0.28
    20 Shew_1265 hypothetical protein (RefSeq) -0.28

    Or look for positive cofitness