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  • Negative cofitness for Shew_2990 from Shewanella loihica PV-4

    TonB-dependent receptor (RefSeq)
    SEED: TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins
    KEGG: iron complex outermembrane recepter protein

    Computing cofitness values with 160 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 Shew_2436 membrane protein involved in aromatic hydrocarbon degradation (RefSeq) -0.40
    2 Shew_1215 recA recombinase A (RefSeq) -0.31
    3 Shew_1611 sbcB exonuclease I (RefSeq) -0.31
    4 Shew_1533 acetyl-CoA synthetase (RefSeq) -0.30
    5 Shew_0711 phosphoglycerate mutase (RefSeq) -0.29
    6 Shew_0900 acyl-CoA dehydrogenase domain-containing protein (RefSeq) -0.27
    7 Shew_2576 3-oxoacid CoA-transferase, B subunit (RefSeq) -0.26
    8 Shew_0107 MATE efflux family protein (RefSeq) -0.25
    9 Shew_1397 amino acid/peptide transporter (RefSeq) -0.25
    10 Shew_3252 porin (RefSeq) -0.25
    11 Shew_0068 fumarate lyase (RefSeq) -0.25
    12 Shew_0023 protoporphyrinogen oxidase (RefSeq) -0.24
    13 Shew_3352 hypothetical protein (RefSeq) -0.24
    14 Shew_1093 hypothetical protein (RefSeq) -0.24
    15 Shew_3691 hypothetical protein (RefSeq) -0.23
    16 Shew_1689 hypothetical protein (RefSeq) -0.23
    17 Shew_0653 LuxR family transcriptional regulator (RefSeq) -0.23
    18 Shew_0112 CheW protein (RefSeq) -0.23
    19 Shew_3164 ABC transporter-related protein (RefSeq) -0.22
    20 Shew_0228 uroporphyrin-III C/tetrapyrrole methyltransferase (RefSeq) -0.22

    Or look for positive cofitness