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  • Negative cofitness for Shew_0887 from Shewanella loihica PV-4

    D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq)
    SEED: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
    KEGG: glycerate dehydrogenase

    Computing cofitness values with 160 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 Shew_0320 frataxin family protein (RefSeq) -0.37
    2 Shew_2496 phage shock protein A, PspA (RefSeq) -0.37
    3 Shew_2382 cysteine synthase A (RefSeq) -0.37
    4 Shew_3017 glycerophosphoryl diester phosphodiesterase (RefSeq) -0.36
    5 Shew_0867 malate dehydrogenase (RefSeq) -0.36
    6 Shew_1134 hypothetical protein (RefSeq) -0.36
    7 Shew_3176 regulatory protein GntR, HTH (RefSeq) -0.35
    8 Shew_3183 hypothetical protein (RefSeq) -0.35
    9 Shew_1582 TatD family hydrolase (RefSeq) -0.35
    10 Shew_2285 UDP-glucose 4-epimerase (RefSeq) -0.34
    11 Shew_0191 cytochrome c, class I (RefSeq) -0.34
    12 Shew_1236 OsmC family protein (RefSeq) -0.34
    13 Shew_0942 RDD domain-containing protein (RefSeq) -0.34
    14 Shew_1806 hypothetical protein (RefSeq) -0.34
    15 Shew_0954 ROK family protein (RefSeq) -0.34
    16 Shew_1547 phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq) -0.34
    17 Shew_3392 ornithine decarboxylase (RefSeq) -0.34
    18 Shew_3531 aromatic amino acid transporter (RefSeq) -0.33
    19 Shew_2033 hypothetical protein (RefSeq) -0.33
    20 Shew_3189 hypothetical protein (RefSeq) -0.33

    Or look for positive cofitness