Negative cofitness for SO3342 from Shewanella oneidensis MR-1

putative transporter, required for L-alanine utilization (from data)
Original annotation: conserved hypothetical protein (NCBI ptt file)
SEED: Putative inner membrane protein

Computing cofitness values with 270 experiments...

Genes with the strongest negative cofitness:

Rank	Hit	Name	Description	Cofit
1	SO0407		ATP-dependent RNA helicase, DEAD box family (NCBI ptt file)	-0.41
2	SO0359	spoT	guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (NCBI ptt file)	-0.41
3	SO0035	smg	smg protein (NCBI ptt file)	-0.40
4	SOA0042		hypothetical protein (NCBI ptt file)	-0.40
5	SO1052	pit	low-affinity inorganic phosphate transporter (NCBI ptt file)	-0.39
6	SO1651		Snf2 family protein (NCBI ptt file)	-0.38
7	SO0558	smtA	smtA protein (NCBI ptt file)	-0.38
8	SO1796	lon	ATP-dependent protease La (NCBI ptt file)	-0.37
9	SO0640		alcohol dehydrogenase, zinc-containing (NCBI ptt file)	-0.35
10	SO0408	gppA	guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase (NCBI ptt file)	-0.35
11	SO4320	aggA	agglutination protein (NCBI ptt file)	-0.35
12	SO0949	brnQ	branched-chain amino acid transport system II carrier protein BrnQ (NCBI ptt file)	-0.35
13	SO4319		HlyD family secretion protein (NCBI ptt file)	-0.34
14	SO3122		sodium/dicarboxylate symporter (NCBI ptt file)	-0.34
15	SOA0041		transcriptional regulator, PemK family (NCBI ptt file)	-0.33
16	SO3987		conserved hypothetical protein (NCBI ptt file)	-0.33
17	SO3770		conserved hypothetical protein TIGR00153 (NCBI ptt file)	-0.31
18	SO1469		transcriptional regulator, Cro/CI family (NCBI ptt file)	-0.31
19	SO4318	rtxB	toxin secretion ATP-binding protein (NCBI ptt file)	-0.30
20	SO0217	tufB	translation elongation factor Tu (NCBI ptt file)	-0.30

Or look for positive cofitness