Negative cofitness for SO2668 from Shewanella oneidensis MR-1

prophage MuSo2, positive regulator of late transcription, putative (NCBI ptt file)
SEED: Middle operon regulator

Computing cofitness values with 270 experiments...

Genes with the strongest negative cofitness:

Rank	Hit	Name	Description	Cofit
1	SO3462	recN	DNA repair protein RecN (NCBI ptt file)	-0.66
2	SO1861	uvrC	excinuclease ABC, C subunit (NCBI ptt file)	-0.63
3	SO4241	recQ	ATP-dependent DNA helicase RecQ (NCBI ptt file)	-0.62
4	SO2015	recR	recombination protein RecR (NCBI ptt file)	-0.60
5	SO4030	uvrA	excinuclease ABC, A subunit (NCBI ptt file)	-0.56
6	SO2506	uvrB	excinuclease ABC, B subunit (NCBI ptt file)	-0.55
7	SO0952	recJ	single-stranded-DNA-specific exonuclease RecJ (NCBI ptt file)	-0.54
8	SO3430	recA	recA protein (NCBI ptt file)	-0.52
9	SO1226	radA	DNA repair protein RadA (NCBI ptt file)	-0.51
10	SO0633	mrcB	penicillin-binding protein 1B (NCBI ptt file)	-0.43
11	SO0467	uvrD	DNA helicase II (NCBI ptt file)	-0.42
12	SO0010	recF	DNA replication and repair protein RecF (NCBI ptt file)	-0.41
13	SO2790	sbcB	exodeoxyribonuclease I (NCBI ptt file)	-0.39
14	SO1350	recO	DNA repair protein RecO (NCBI ptt file)	-0.38
15	SO2744		DNA damage response helicase (yejH or radD) (from data)	-0.38
16	SO2815		CBS domain protein (NCBI ptt file)	-0.33
17	SO3294	xseA	exodeoxyribonuclease VII, large subunit (NCBI ptt file)	-0.33
18	SO2308		ATPase, AAA family (NCBI ptt file)	-0.33
19	SO3829		conserved hypothetical protein (NCBI ptt file)	-0.32
20	SO4364	recG	ATP-dependent DNA helicase RecG (NCBI ptt file)	-0.30

Or look for positive cofitness