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  • Negative cofitness for SO1165 from Shewanella oneidensis MR-1

    rare lipoprotein A (NCBI ptt file)
    SEED: Rare lipoprotein A precursor
    KEGG: rare lipoprotein A

    Computing cofitness values with 270 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 SOA0106 methyl-accepting chemotaxis protein (NCBI ptt file) -0.69
    2 SO4207 GGDEF domain protein (NCBI ptt file) -0.65
    3 SO4205 hypothetical protein (NCBI ptt file) -0.63
    4 SO3302 serine protease, subtilase family (NCBI ptt file) -0.61
    5 SO4206 hydrolase, TatD family (NCBI ptt file) -0.59
    6 SO3298 conserved hypothetical protein (NCBI ptt file) -0.55
    7 SO3306 sensor histidine kinase (NCBI ptt file) -0.50
    8 SO3297 transcriptional regulator, LysR family (NCBI ptt file) -0.48
    9 SO3299 Pal/histidase family protein (NCBI ptt file) -0.46
    10 SO3303 chitinase domain protein (NCBI ptt file) -0.46
    11 SO3301 flavocytochrome c flavin subunit (NCBI ptt file) -0.44
    12 SO3300 cytochrome c (NCBI ptt file) -0.43
    13 SO3504 conserved hypothetical protein (NCBI ptt file) -0.42
    14 SOA0114 ompA outer membrane protein A (NCBI ptt file) -0.42
    15 SO3149 conserved hypothetical protein (NCBI ptt file) -0.41
    16 SO3582 methyl-accepting chemotaxis protein (NCBI) -0.41
    17 SO4002 sensory transduction histidine kinase (NCBI ptt file) -0.41
    18 SOA0108 hypothetical protein (NCBI ptt file) -0.41
    19 SO3140.2 hypothetical protein (NCBI ptt file) -0.40
    20 SO3334 GGDEF family protein (NCBI ptt file) -0.40

    Or look for positive cofitness