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  • Negative cofitness for Rru_A3428 from Rhodospirillum rubrum S1H

    Tryptophan synthase (NCBI)
    SEED: Tryptophan synthase alpha chain (EC 4.2.1.20)
    KEGG: tryptophan synthase alpha chain

    Computing cofitness values with 60 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 Rru_A3101 hypothetical protein (NCBI) -0.33
    2 Rru_A1720 Carboxymuconolactone decarboxylase (NCBI) -0.30
    3 Rru_A3506 putative branched-chain amino acid transport system substrate-binding protein (NCBI) -0.30
    4 Rru_A1840 Penicillin amidase (NCBI) -0.30
    5 Rru_A0722 Sigma-24 (FecI) (NCBI) -0.30
    6 Rru_A0391 hypothetical protein (NCBI) -0.30
    7 Rru_A2207 hypothetical protein (NCBI) -0.28
    8 Rru_A0303 hypothetical protein (NCBI) -0.27
    9 Rru_A3070 Transcriptional Regulator, AsnC family (NCBI) -0.27
    10 Rru_B0038 dTDP-4-dehydrorhamnose 3,5-epimerase (NCBI) -0.27
    11 Rru_A2297 Ribokinase (NCBI) -0.26
    12 Rru_A2445 Protein of unknown function DUF140 (NCBI) -0.26
    13 Rru_A3105 glycosyl transferases group 1 (NCBI) -0.26
    14 Rru_A1967 Peptidase S8 and S53, subtilisin, kexin, sedolisin (NCBI) -0.26
    15 Rru_A2003 Radical SAM (NCBI) -0.25
    16 Rru_A1920 ABC transporter component (NCBI) -0.25
    17 Rru_A2920 hypothetical protein (NCBI) -0.25
    18 Rru_A1166 hydrogenase expression/formation protein hupH (NCBI) -0.24
    19 Rru_A1936 ErfK/YbiS/YcfS/YnhG (NCBI) -0.24
    20 Rru_A0967 Carbon-monoxide dehydrogenase (NCBI) -0.24

    Or look for positive cofitness