Top cofit genes for RR42_RS32070 from Cupriavidus basilensis FW507-4G11

LysR family transcriptional regulator
SEED: Hypothetical transcriptional regulator ydcI

Rank Hit Name Description Conserved? Cofitness  
1 RR42_RS29055 AraC family transcriptional regulator 0.28 0.77
2 RR42_RS32055 3-carboxymuconate cycloisomerase PcaB (EC 5.5.1.2) (from data) 0.89 0.62
3 RR42_RS02495 cardiolipin synthase; exported protein 0.38 0.59
4 RR42_RS03030 required for 4-hydroxybenzoate transport, together with NodT, MFP, and FUSC proteins (RR42_RS03040, RR42_RS03035, and RR42_RS03025) (from data) no 0.58
5 RR42_RS03040 Outer membrane protein (NodT-like) required for 4-hydroxybenzoate transport, together with FUSC, MFP, and DUF1656 proteins (RR42_RS03025, RR42_RS03035, and RR42_RS03030) (from data) no 0.57
6 RR42_RS32060 protocatechuate 3,4-dioxygenase 0.93 0.54
7 RR42_RS03025 Inner membrane protein (FUSC-like) required for 4-hydroxybenzoate transport, together with NodT, MFP, and DUF1656 proteins (RR42_RS03040, RR42_RS03035, and RR42_RS03030) (from data) 0.27 0.53
8 RR42_RS21940 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) (from data) 0.97 0.52
9 RR42_RS32065 protocatechuate 3,4-dioxygenase, beta subunit (EC 1.13.11.3) (from data) 0.96 0.52
10 RR42_RS01400 5-formyltetrahydrofolate cyclo-ligase 0.21 0.51
11 RR42_RS32050 AraC family transcriptional regulator no 0.48
12 RR42_RS30640 DNA mismatch repair protein MutT no 0.43
13 RR42_RS07620 polyhydroxyalkanoate synthesis repressor PhaR 0.50 0.42
14 RR42_RS17720 sugar kinase no 0.40
15 RR42_RS35925 3-oxoadipate CoA-transferase 0.91 0.40
16 RR42_RS05210 malic enzyme no 0.36
17 RR42_RS35915 beta-ketoadipyl CoA thiolase 0.88 0.34
18 RR42_RS17300 D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) (from data) no 0.32
19 RR42_RS01785 PTS fructose transporter subunit IIA no 0.31
20 RR42_RS14585 L-PSP family endoribonuclease no 0.31

Or look for negative cofitness