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  • Top cofit genes for RR42_RS20275 from Cupriavidus basilensis FW507-4G11

    ABC transporter permease
    SEED: Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein
    KEGG: branched-chain amino acid transport system substrate-binding protein

    Rank Hit Name Description Conserved? Cofitness  
    1 RR42_RS20270 ABC transporter permease 0.80 0.60
    2 RR42_RS20265 ABC transporter permease 0.83 0.54
    3 RR42_RS20420 maltoporin no 0.49
    4 RR42_RS17980 general secretion pathway protein GspE 0.36 0.46
    5 RR42_RS20380 histidine kinase no 0.46
    6 RR42_RS20280 histidinol dehydrogenase 0.71 0.45
    7 RR42_RS12405 hypothetical protein no 0.44
    8 RR42_RS15565 3,4-dihydroxy-2-butanone 4-phosphate synthase 0.49 0.44
    9 RR42_RS20375 transcriptional regulator no 0.41
    10 RR42_RS01185 muropeptide transporter 0.49 0.41
    11 RR42_RS35460 membrane protein no 0.41
    12 RR42_RS10215 N-ethylmaleimide reductase no 0.39
    13 RR42_RS07285 ABC transporter substrate-binding protein no 0.39
    14 RR42_RS15585 lytic transglycosylase 0.40 0.38
    15 RR42_RS36705 multidrug transporter no 0.38
    16 RR42_RS06395 TetR family transcriptional regulator no 0.38
    17 RR42_RS37250 hypothetical protein no 0.38
    18 RR42_RS17195 transglutaminase no 0.38
    19 RR42_RS20685 lipoprotein no 0.37
    20 RR42_RS24605 TetR family transcriptional regulator no 0.37

    Or look for negative cofitness