Top cofit genes for RR42_RS16960 from Cupriavidus basilensis FW507-4G11

ABC transporter ATP-binding protein
SEED: Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1)
KEGG: branched-chain amino acid transport system ATP-binding protein

Rank	Hit	Name	Description	Conserved?	Cofitness
1	RR42_RS16970		ABC transporter ATP-binding protein	0.99	0.97
2	RR42_RS16980		branched-chain amino acid ABC transporter substrate-binding protein	0.97	0.95
3	RR42_RS16975		ABC transporter permease	0.99	0.95
4	RR42_RS16965		ABC transporter	0.99	0.95
5	RR42_RS11885		(protein-PII) uridylyltransferase	0.74	0.72
6	RR42_RS12980		chemotaxis protein CheY	0.49	0.70
7	RR42_RS12985		histidine kinase	0.72	0.68
8	RR42_RS01955		nitrate transporter	0.36	0.61
9	RR42_RS15905		phosphoenolpyruvate carboxylase	0.42	0.56
10	RR42_RS00725		hypothetical protein	no	0.56
11	RR42_RS26895		3-methylcrotonyl-CoA carboxylase	0.45	0.54
12	RR42_RS26915		AMP-binding protein	0.54	0.54
13	RR42_RS00955		hydroxymethylglutaryl-CoA lyase	0.43	0.52
14	RR42_RS26905		methylcrotonoyl-CoA carboxylase	0.70	0.51
15	RR42_RS34250		LysR family transcriptional regulator	0.36	0.50
16	RR42_RS12040		MFS transporter	no	0.49
17	RR42_RS05980		TetR family transcriptional regulator	0.40	0.48
18	RR42_RS02085		RNA polymerase subunit sigma-54	0.44	0.47
19	RR42_RS34245		branched-chain alpha-ketoacid:ferredoxin oxidoreductase, fused (from data)	0.38	0.47
20	RR42_RS11790		phosphoenolpyruvate synthase	0.76	0.47

Or look for negative cofitness