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  • Top cofit genes for RR42_RS11465 from Cupriavidus basilensis FW507-4G11

    pyrroloquinoline quinone biosynthesis protein PqqC
    SEED: Pyrroloquinoline-quinone synthase (EC 1.3.3.11)
    KEGG: pyrroloquinoline-quinone synthase

    Rank Hit Name Description Conserved? Cofitness  
    1 RR42_RS11460 pyrroloquinoline quinone biosynthesis protein PqqB 0.89 0.78
    2 RR42_RS14635 proline-specific permease no 0.69
    3 RR42_RS14640 histidine ammonia-lyase no 0.61
    4 RR42_RS11440 cytochrome Cbb3 0.86 0.49
    5 RR42_RS14645 urocanate hydratase no 0.46
    6 RR42_RS12390 transporter no 0.33
    7 RR42_RS14420 branched-chain amino acid transporter permease subunit LivH no 0.33
    8 RR42_RS14415 leucine/isoleucine/valine transporter permease subunit 0.52 0.33
    9 RR42_RS07450 ABC transporter permease 0.39 0.32
    10 RR42_RS14425 leucine ABC transporter substrate-binding protein 0.20 0.31
    11 RR42_RS11435 ABC transporter permease 0.70 0.29
    12 RR42_RS33495 L-phenylalanine:H+ symporter AroP (from data) no 0.29
    13 RR42_RS07455 ABC transporter substrate-binding protein no 0.29
    14 RR42_RS03750 formate dehydrogenase no 0.29
    15 RR42_RS20125 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) no 0.27
    16 RR42_RS04900 serine/threonine protein kinase no 0.27
    17 RR42_RS07330 histidine utilization repressor no 0.26
    18 RR42_RS06245 SAM-dependent methyltransferase no 0.26
    19 RR42_RS32815 hypothetical protein no 0.26
    20 RR42_RS03760 formate dehydrogenase no 0.26

    Or look for negative cofitness