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  • Top cofit genes for RR42_RS11460 from Cupriavidus basilensis FW507-4G11

    pyrroloquinoline quinone biosynthesis protein PqqB
    SEED: Coenzyme PQQ synthesis protein B
    KEGG: pyrroloquinoline quinone biosynthesis protein B

    Rank Hit Name Description Conserved? Cofitness  
    1 RR42_RS11465 pyrroloquinoline quinone biosynthesis protein PqqC 0.89 0.78
    2 RR42_RS14635 proline-specific permease no 0.66
    3 RR42_RS14640 histidine ammonia-lyase no 0.59
    4 RR42_RS14645 urocanate hydratase 0.36 0.56
    5 RR42_RS34275 virulence protein no 0.45
    6 RR42_RS11440 cytochrome Cbb3 0.89 0.43
    7 RR42_RS11455 prolyl aminopeptidase no 0.34
    8 RR42_RS12390 transporter no 0.32
    9 RR42_RS31390 2-dehydropantoate 2-reductase no 0.31
    10 RR42_RS29945 enoyl-CoA hydratase no 0.28
    11 RR42_RS02290 multidrug ABC transporter ATP-binding protein no 0.28
    12 RR42_RS10845 cupin 0.33 0.28
    13 RR42_RS00725 hypothetical protein no 0.28
    14 RR42_RS00865 phenylacetic acid degradation protein PaaI no 0.27
    15 RR42_RS20125 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) 0.52 0.27
    16 RR42_RS24460 hypothetical protein no 0.26
    17 RR42_RS03760 formate dehydrogenase 0.21 0.26
    18 RR42_RS35270 3-hydroxyacyl-CoA dehydrogenase no 0.26
    19 RR42_RS01585 amino acid permease no 0.25
    20 RR42_RS08735 hypothetical protein no 0.25

    Or look for negative cofitness