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  • Top cofit genes for RR42_RS09500 from Cupriavidus basilensis FW507-4G11

    dehydrogenase
    SEED: 2-ketogluconate utilization repressor PtxS
    KEGG: LacI family transcriptional regulator, kdg operon repressor

    Rank Hit Name Description Conserved? Cofitness  
    1 RR42_RS24605 TetR family transcriptional regulator no 0.72
    2 RR42_RS20380 histidine kinase 0.45 0.63
    3 RR42_RS00380 GntR family transcriptional regulator no 0.63
    4 RR42_RS27735 GntR family transcriptional regulator no 0.62
    5 RR42_RS18815 cytochrome C 0.83 0.60
    6 RR42_RS31385 GntR family transcriptional regulator 0.56 0.59
    7 RR42_RS02060 nucleotide-binding protein 0.44 0.58
    8 RR42_RS06395 TetR family transcriptional regulator no 0.58
    9 RR42_RS20375 transcriptional regulator no 0.57
    10 RR42_RS09100 transcriptional regulator 0.71 0.57
    11 RR42_RS00250 GntR family transcriptional regulator no 0.54
    12 RR42_RS33575 hypothetical protein no 0.53
    13 RR42_RS07540 ABC transporter permease 0.32 0.53
    14 RR42_RS33650 IclR family transcriptional regulator no 0.53
    15 RR42_RS11150 branched-chain amino acid ABC transporter substrate-binding protein no 0.53
    16 RR42_RS11155 long-chain fatty acid--CoA ligase 0.40 0.52
    17 RR42_RS34870 hypothetical protein no 0.51
    18 RR42_RS01545 TetR family transcriptional regulator no 0.51
    19 RR42_RS09920 TetR family transcriptional regulator no 0.51
    20 RR42_RS11145 ABC transporter permease no 0.50

    Or look for negative cofitness