Top cofit genes for RR42_RS01085 from Cupriavidus basilensis FW507-4G11

chemotaxis protein CheY
SEED: Dna binding response regulator PrrA (RegA)
KEGG: two-component system, response regulator RegA

Rank	Hit	Name	Description	Conserved?	Cofitness
1	RR42_RS01090		histidine kinase	0.99	0.57
2	RR42_RS11770		cyclase	no	0.42
3	RR42_RS06095		hypothetical protein	no	0.41
4	RR42_RS01910		cytochrome C oxidase subunit I	no	0.37
5	RR42_RS01880		cytochrome oxidase subunit I	0.73	0.36
6	RR42_RS18955		ABC transporter	0.43	0.36
7	RR42_RS21220		iron transporter FeoB	0.57	0.35
8	RR42_RS31275		Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (from data)	0.37	0.35
9	RR42_RS31270		fumarylacetoacetase	no	0.34
10	RR42_RS18575		ABC transporter ATP-binding protein	0.21	0.33
11	RR42_RS08035		DNA methyltransferase	no	0.33
12	RR42_RS01915		cytochrome C oxidase subunit I	0.39	0.33
13	RR42_RS13460		phosphate transporter permease subunit PtsA	0.55	0.33
14	RR42_RS16135		ABC transporter permease	no	0.32
15	RR42_RS34370		membrane protein	no	0.32
16	RR42_RS17255		ABC transporter permease	no	0.32
17	RR42_RS28150		EmrB/QacA subfamily drug resistance transporter	no	0.32
18	RR42_RS32600		cytochrome O ubiquinol oxidase subunit II	0.71	0.32
19	RR42_RS12550		hypothetical protein	no	0.31
20	RR42_RS32140		aldehyde dehydrogenase	no	0.30

Or look for negative cofitness