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  • Top cofit genes for RALBFv3_RS23760 from Ralstonia solanacearum IBSBF1503

    type III effector

    Rank Hit Name Description Conserved? Cofitness  
    1 RALBFv3_RS21700 flagellar assembly peptidoglycan hydrolase FlgJ no 0.58
    2 RALBFv3_RS18995 thiazolinyl imide reductase no 0.56
    3 RALBFv3_RS09505 histidine kinase no 0.53
    4 RALBFv3_RS18150 DNA-binding response regulator no 0.53
    5 RALBFv3_RS09835 3-keto-5-aminohexanoate cleavage protein no 0.51
    6 RALBFv3_RS20330 DUF4810 domain-containing protein no 0.50
    7 RALBFv3_RS22620 hypothetical protein no 0.50
    8 RALBFv3_RS13150 hypothetical protein no 0.49
    9 RALBFv3_RS20225 RNA ligase RtcB family protein no 0.49
    10 RALBFv3_RS04425 DUF3460 domain-containing protein no 0.47
    11 RALBFv3_RS11505 acyl CoA:acetate/3-ketoacid CoA transferase no 0.47
    12 RALBFv3_RS11715 bifunctional diguanylate cyclase/phosphodiesterase no 0.47
    13 RALBFv3_RS17770 LysR family transcriptional regulator no 0.47
    14 RALBFv3_RS10875 phosphoenolpyruvate--protein phosphotransferase no 0.46
    15 RALBFv3_RS10040 AraC family transcriptional regulator no 0.46
    16 RALBFv3_RS21995 TolC family protein no 0.46
    17 RALBFv3_RS05935 HARPIN no 0.45
    18 RALBFv3_RS01010 TatD family deoxyribonuclease no 0.45
    19 RALBFv3_RS15425 Rieske family ferredoxin no 0.45
    20 RALBFv3_RS21085 hypothetical protein no 0.45

    Or look for negative cofitness