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  • Top cofit genes for Psyr_4878 from Pseudomonas syringae pv. syringae B728a

    outer membrane porin
    SEED: Outer membrane porin, OprD family

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_4078 AmpG-related permease 0.80 0.64
    2 Psyr_3469 Glycosyl transferase, family 2 0.65 0.60
    3 Psyr_4678 GGDEF domain protein no 0.59
    4 Psyr_0200 conserved hypothetical protein no 0.57
    5 Psyr_4882 protein translocase subunit secB 0.48 0.55
    6 Psyr_4623 Aminoglycoside phosphotransferase 0.75 0.54
    7 Psyr_3303 Polysaccharide export protein no 0.53
    8 Psyr_2969 RND efflux system, outer membrane lipoprotein, NodT 0.34 0.53
    9 Psyr_2138 Glycosyl transferase, family 2 0.49 0.53
    10 Psyr_4512 putative phage-related protein no 0.52
    11 Psyr_5036 Response regulator receiver no 0.51
    12 Psyr_4622 Nucleotidyl transferase 0.84 0.50
    13 Psyr_3470 Flagellin, N-terminal 0.64 0.50
    14 Psyr_3485 MCP methyltransferase, CheR-type no 0.50
    15 Psyr_5065 ATP-dependent DNA helicase UvrD no 0.49
    16 Psyr_3435 chemotaxis phosphatase, CheZ no 0.49
    17 Psyr_4377 response regulator receiver modulated diguanylate cyclase no 0.48
    18 Psyr_2968 Hydrophobe/amphiphile efflux-1 HAE1 no 0.48
    19 Psyr_4567 Protein of unknown function UPF0075 0.69 0.48
    20 Psyr_3856 Helicase c2 no 0.48

    Or look for negative cofitness