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  • Top cofit genes for Psyr_4144 from Pseudomonas syringae pv. syringae B728a

    Protein of unknown function DUF1239
    SEED: Uncharacterized protein YrbK clustered with lipopolysaccharide transporters
    KEGG: lipopolysaccharide export system protein LptC

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_1614 lipid A biosynthesis acyltransferase 0.27 0.53
    2 Psyr_4659 type III effector HopAB1 no 0.51
    3 Psyr_1704 Amino acid adenylation no 0.46
    4 Psyr_1719 conserved hypothetical protein no 0.44
    5 Psyr_4007 Secretion protein HlyD 0.34 0.42
    6 Psyr_4943 Peptidoglycan-binding LysM:Transport-associated 0.39 0.39
    7 Psyr_3666 Protein of unknown function DUF195 no 0.39
    8 Psyr_2000 transcriptional regulator, GntR family 0.51 0.39
    9 Psyr_4501 transcriptional regulator, MarR family no 0.39
    10 Psyr_0014 lipid A biosynthesis acyltransferase 0.59 0.38
    11 Psyr_2424 Integral membrane protein TerC 0.68 0.38
    12 Psyr_1218 type III helper protein HrpK1 no 0.38
    13 Psyr_3459 Helix-turn-helix, Fis-type 0.51 0.38
    14 Psyr_2692 Polysaccharide deacetylase no 0.38
    15 Psyr_3691 conserved hypothetical protein 0.68 0.38
    16 Psyr_2616 Amino acid adenylation no 0.38
    17 Psyr_1584 Aspartyl/Asparaginyl beta-hydroxylase 0.46 0.38
    18 Psyr_4140 Protein of unknown function DUF140 0.45 0.37
    19 Psyr_2290 TonB-dependent receptor:TonB-dependent receptor 0.30 0.37
    20 Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE 0.50 0.37

    Or look for negative cofitness