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  • Top cofit genes for Psyr_4014 from Pseudomonas syringae pv. syringae B728a

    regulatory protein, IclR
    SEED: Pca regulon regulatory protein PcaR
    KEGG: IclR family transcriptional regulator, pca regulon regulatory protein

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_1120 glucose-6-phosphate 1-dehydrogenase no 0.49
    2 Psyr_1914 transaldolase 0.42 0.47
    3 Psyr_1108 glyceraldehyde-3-phosphate dehydrogenase 0.38 0.45
    4 Psyr_3955 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF 0.31 0.44
    5 Psyr_1542 quinolinate synthetase 0.45 0.44
    6 Psyr_5061 acetyl-CoA carboxylase carboxyltransferase subunit alpha / biotin carboxylase 0.38 0.44
    7 Psyr_4940 3'(2'),5'-bisphosphate nucleotidase 0.77 0.42
    8 Psyr_0848 ketol-acid reductoisomerase 0.65 0.41
    9 Psyr_3959 L-aspartate oxidase 0.44 0.40
    10 Psyr_5060 Oxaloacetate decarboxylase, alpha subunit 0.18 0.40
    11 Psyr_3985 Pectate lyase/Amb allergen no 0.40
    12 Psyr_1109 6-phosphogluconate dehydratase no 0.40
    13 Psyr_1251 quinoprotein 0.65 0.39
    14 Psyr_2206 amino acid/amide ABC transporter substrate-binding protein, HAAT family no 0.39
    15 Psyr_3566 transcriptional regulator, AraC family no 0.39
    16 Psyr_2077 regulatory protein, LysR:LysR, substrate-binding protein 0.59 0.39
    17 Psyr_0473 Methionine biosynthesis MetW 0.66 0.39
    18 Psyr_0412 glutamate synthase (NADPH) small subunit 0.62 0.39
    19 Psyr_0411 glutamate synthase (NADPH) large subunit 0.57 0.39
    20 Psyr_4852 D-3-phosphoglycerate dehydrogenase 0.61 0.39

    Or look for negative cofitness