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  • Top cofit genes for Psyr_4009 from Pseudomonas syringae pv. syringae B728a

    RND efflux system, outer membrane lipoprotein, NodT
    SEED: RND efflux system, outer membrane lipoprotein CmeC

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_4008 Hydrophobe/amphiphile efflux-1 HAE1 0.98 0.90
    2 Psyr_4007 Secretion protein HlyD 0.98 0.86
    3 Psyr_1268 extracellular solute-binding protein, family 3:SLT 0.60 0.58
    4 Psyr_0202 transcriptional regulator, LysR family 0.51 0.50
    5 Psyr_1584 Aspartyl/Asparaginyl beta-hydroxylase 0.54 0.46
    6 Psyr_1543 Peptidase M48, Ste24p 0.44 0.45
    7 Psyr_1614 lipid A biosynthesis acyltransferase no 0.42
    8 Psyr_2282 Hydrophobe/amphiphile efflux-1 HAE1 0.90 0.41
    9 Psyr_0265 N-acetylmuramoyl-L-alanine amidase, family 2 0.92 0.41
    10 Psyr_4381 arginine decarboxylase 0.28 0.40
    11 Psyr_1846 hypothetical protein no 0.40
    12 Psyr_0234 transcriptional regulator, AsnC family 0.27 0.39
    13 Psyr_1650 aminodeoxychorismate lyase apoprotein 0.48 0.39
    14 Psyr_1921 Alpha/beta hydrolase fold protein no 0.39
    15 Psyr_2283 Secretion protein HlyD 0.97 0.39
    16 Psyr_4912 amino acid ABC transporter substrate-binding protein, PAAT family 0.45 0.37
    17 Psyr_0014 lipid A biosynthesis acyltransferase 0.41 0.37
    18 Psyr_4033 YD repeat protein no 0.36
    19 Psyr_2986 Glycoside hydrolase, family 15 0.23 0.36
    20 Psyr_1599 C-terminal processing peptidase-1, Serine peptidase, MEROPS family S41A 0.89 0.36

    Or look for negative cofitness