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  • Top cofit genes for Psyr_3958 from Pseudomonas syringae pv. syringae B728a

    RNA polymerase, sigma-24 subunit, RpoE
    SEED: RNA polymerase sigma-H factor AlgT
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_4130 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF 0.95 0.96
    2 Psyr_0219 phosphomannomutase 0.80 0.84
    3 Psyr_1218 type III helper protein HrpK1 0.72 0.83
    4 Psyr_1350 site-2 protease, Metallo peptidase, MEROPS family M50B 0.97 0.82
    5 Psyr_1200 outer-membrane type III secretion protein HrcC 0.65 0.81
    6 Psyr_1055 Membrane bound O-acyl transferase, MBOAT 0.75 0.80
    7 Psyr_1205 type III secretion protein HrcU 0.68 0.80
    8 Psyr_1210 type III secretion protein HrcQa no 0.80
    9 Psyr_1208 type III secretion protein HrcR 0.74 0.79
    10 Psyr_1195 type III secretion apparatus lipoprotein, YscJ/HrcJ family 0.75 0.79
    11 Psyr_1216 type III secretion outer membrane protein PopN 0.63 0.79
    12 Psyr_1213 type III secretion cytoplasmic ATPase HrcN 0.68 0.79
    13 Psyr_1215 Type III secretion protein HrcV 0.60 0.78
    14 Psyr_1191 type III transcriptional regulator HrpS 0.72 0.78
    15 Psyr_1053 alginate biosynthesis protein AlgF 0.67 0.77
    16 Psyr_2616 Amino acid adenylation 0.59 0.77
    17 Psyr_1063 GDP-mannose 6-dehydrogenase 0.69 0.77
    18 Psyr_1197 type III secretion protein HrpE 0.70 0.77
    19 Psyr_1059 alginate export porin 0.66 0.77
    20 Psyr_1206 type III secretion protein HrcT 0.69 0.77

    Or look for negative cofitness