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  • Top cofit genes for Psyr_3626 from Pseudomonas syringae pv. syringae B728a

    transcriptional regulator, MarR family
    SEED: Organic hydroperoxide resistance transcriptional regulator

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_3634 transcriptional regulator, TetR family no 0.46
    2 Psyr_4274 conserved hypothetical protein no 0.46
    3 Psyr_4279 16S rRNA m(2)G 1207 methyltransferase / 23S rRNA m(2)G-1835 methyltransferase no 0.44
    4 Psyr_2608 Amino acid adenylation no 0.42
    5 Psyr_0074 diguanylate cyclase/phosphodiesterase no 0.41
    6 Psyr_4770 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 0.39 0.41
    7 Psyr_1515 hypothetical protein no 0.40
    8 Psyr_2123 protocatechuate 3,4-dioxygenase, alpha subunit no 0.40
    9 Psyr_4130 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF no 0.39
    10 Psyr_3843 diguanylate cyclase/phosphodiesterase no 0.39
    11 Psyr_0478 pilus retraction ATPase PilT 0.58 0.39
    12 Psyr_0853 conserved hypothetical protein 0.35 0.39
    13 Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE no 0.38
    14 Psyr_0697 tRNA 2-selenouridine synthase no 0.38
    15 Psyr_3157 Aldehyde dehydrogenase no 0.38
    16 Psyr_2543 conserved hypothetical protein no 0.38
    17 Psyr_1618 Dihydrodipicolinate synthetase no 0.37
    18 Psyr_4659 type III effector HopAB1 no 0.37
    19 Psyr_3929 conserved hypothetical protein no 0.37
    20 Psyr_3495 ATP-binding region, ATPase-like protein no 0.37

    Or look for negative cofitness