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  • Top cofit genes for Psyr_2692 from Pseudomonas syringae pv. syringae B728a

    Polysaccharide deacetylase
    SEED: Polymyxin resistance protein PmrJ, predicted deacetylase
    KEGG: undecaprenyl phosphate-alpha-L-ara4FN deformylase

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_4466 Thioredoxin no 0.48
    2 Psyr_4659 type III effector HopAB1 no 0.47
    3 Psyr_4197 DNA replication and repair protein RecN no 0.46
    4 Psyr_0478 pilus retraction ATPase PilT no 0.45
    5 Psyr_5053 asparaginase no 0.45
    6 Psyr_1614 lipid A biosynthesis acyltransferase 0.80 0.45
    7 Psyr_1704 Amino acid adenylation no 0.45
    8 Psyr_1055 Membrane bound O-acyl transferase, MBOAT no 0.44
    9 Psyr_0288 Carbonate dehydratase no 0.44
    10 Psyr_1054 alginate biosynthesis protein AlgJ no 0.43
    11 Psyr_1395 virulence 0.48 0.42
    12 Psyr_0763 Porin, LamB type 0.39 0.41
    13 Psyr_1705 Amino acid adenylation no 0.41
    14 Psyr_2018 Dienelactone hydrolase no 0.41
    15 Psyr_1396 Protein of unknown function DUF470:Protein of unknown function DUF471:Protein of unknown function DUF472 0.42 0.40
    16 Psyr_1557 NADH:flavin oxidoreductase/NADH oxidase no 0.40
    17 Psyr_2290 TonB-dependent receptor:TonB-dependent receptor no 0.40
    18 Psyr_1211 type III secretion protein HrpP no 0.40
    19 Psyr_2000 transcriptional regulator, GntR family 0.72 0.39
    20 Psyr_1053 alginate biosynthesis protein AlgF no 0.39

    Or look for negative cofitness