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  • Top cofit genes for Psyr_2474 from Pseudomonas syringae pv. syringae B728a

    Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region
    SEED: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4)
    KEGG: acyl-CoA dehydrogenase

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_0103 conserved hypothetical protein no 0.47
    2 Psyr_3150 type II secretion system protein no 0.41
    3 Psyr_4659 type III effector HopAB1 0.37 0.41
    4 Psyr_3306 Glycoside hydrolase, family 5 no 0.40
    5 Psyr_1206 type III secretion protein HrcT no 0.38
    6 Psyr_2614 Amino acid adenylation no 0.38
    7 Psyr_1054 alginate biosynthesis protein AlgJ no 0.38
    8 Psyr_1208 type III secretion protein HrcR no 0.37
    9 Psyr_4919 type III effector protein AvrPto1 no 0.36
    10 Psyr_2609 Alpha/beta hydrolase fold protein no 0.36
    11 Psyr_0763 Porin, LamB type no 0.36
    12 Psyr_4770 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) no 0.36
    13 Psyr_0219 phosphomannomutase 0.64 0.36
    14 Psyr_1213 type III secretion cytoplasmic ATPase HrcN no 0.35
    15 Psyr_2692 Polysaccharide deacetylase no 0.35
    16 Psyr_3212 Response regulator receiver:Transcriptional regulatory protein, C-terminal no 0.34
    17 Psyr_3844 conserved hypothetical protein no 0.34
    18 Psyr_2268 transcriptional regulator, LysR family no 0.34
    19 Psyr_4025 ATPase 0.47 0.34
    20 Psyr_1057 alginate biosynthesis protein AlgX 0.38 0.34

    Or look for negative cofitness