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  • Top cofit genes for Psyr_2418 from Pseudomonas syringae pv. syringae B728a

    shikimate dehydrogenase
    SEED: Shikimate 5-dehydrogenase I gamma (EC 1.1.1.25)
    KEGG: shikimate dehydrogenase

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_1590 L-carnitine dehydratase/bile acid-inducible protein F no 0.54
    2 Psyr_4573 Histidine triad (HIT) protein 0.28 0.46
    3 Psyr_5074 conserved hypothetical protein no 0.46
    4 Psyr_4507 Inositol monophosphatase no 0.45
    5 Psyr_2489 Alpha amylase, catalytic region no 0.45
    6 Psyr_1342 methionine aminopeptidase, type I no 0.45
    7 Psyr_3830 3-oxoacyl-[acyl-carrier protein] synthase 0.21 0.44
    8 Psyr_4575 adenosylmethionine decarboxylase proenzyme 0.42 0.43
    9 Psyr_0803 conserved hypothetical protein no 0.43
    10 Psyr_1253 2-keto-4-methylthiobutyrate aminotransferase apoenzyme 0.45 0.42
    11 Psyr_2919 conserved hypothetical protein no 0.42
    12 Psyr_4019 H-NS family protein MvaT no 0.42
    13 Psyr_1074 amino acid ABC transporter membrane protein 2, PAAT family no 0.42
    14 Psyr_2267 extracellular solute-binding protein, family 5 no 0.42
    15 Psyr_2272 Helix-turn-helix motif protein no 0.41
    16 Psyr_1583 cysteine synthase 0.31 0.41
    17 Psyr_1975 Integrase, catalytic region no 0.41
    18 Psyr_2925 Helix-turn-helix motif protein no 0.41
    19 Psyr_2570 monosaccharide ABC transporter membrane protein, CUT2 family no 0.40
    20 Psyr_1265 hypothetical protein no 0.40

    Or look for negative cofitness