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  • Top cofit genes for Psyr_2397 from Pseudomonas syringae pv. syringae B728a

    transcriptional regulator, LysR family
    SEED: Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_3934 Short-chain dehydrogenase/reductase SDR no 0.43
    2 Psyr_1515 hypothetical protein no 0.42
    3 Psyr_0854 conserved hypothetical protein 0.23 0.41
    4 Psyr_2351 tRNA synthetase, class-II (G, H, P and S) no 0.40
    5 Psyr_4720 conserved domain protein no 0.40
    6 Psyr_2848 hypothetical protein no 0.39
    7 Psyr_3581 ribosomal large subunit pseudouridine synthase B no 0.38
    8 Psyr_1628 Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, N-terminal no 0.37
    9 Psyr_2140 conserved hypothetical protein no 0.37
    10 Psyr_3152 hypothetical protein no 0.37
    11 Psyr_3297 CheW protein 0.39 0.36
    12 Psyr_2481 thiol peroxidase (atypical 2-Cys peroxiredoxin) no 0.36
    13 Psyr_3310 transferase hexapeptide repeat protein no 0.36
    14 Psyr_1799 Protein of unknown function DUF6 0.23 0.35
    15 Psyr_2705 Helix-turn-helix motif protein 0.35 0.34
    16 Psyr_2480 transcriptional regulator, LysR family no 0.34
    17 Psyr_1775 Aldo/keto reductase 0.36 0.34
    18 Psyr_4735 GTP-binding protein, HSR1-related protein 0.37 0.33
    19 Psyr_1553 hypothetical protein no 0.33
    20 Psyr_3305 Glycosyl transferase, group 1 no 0.33

    Or look for negative cofitness