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Gene
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Cofit
Protein
Homologs
Top cofit genes for Psyr_2355 from
Pseudomonas syringae pv. syringae B728a
GAF
SEED: GAF domain protein
Rank
Hit
Name
Description
Conserved?
Cofitness
1
Psyr
_0290
ThiJ/PfpI
no
0.42
2
Psyr
_0199
Glutathione-dependent formaldehyde-activating, GFA
no
0.39
3
Psyr
_1610
ribosomal large subunit pseudouridine synthase A
no
0.38
4
Psyr
_3706
Protein of unknown function DUF335
no
0.37
5
Psyr
_1587
Bile acid:sodium symporter
no
0.36
6
Psyr
_1438
CDS
no
0.36
7
Psyr
_0636
LrgA
no
0.36
8
Psyr
_0271
conserved hypothetical protein
no
0.35
9
Psyr
_5000
conserved hypothetical protein
no
0.35
10
Psyr
_0855
conserved hypothetical protein
no
0.34
11
Psyr
_2999
LmbE-like protein
no
0.34
12
Psyr
_2567
Zinc-containing alcohol dehydrogenase superfamily
no
0.33
13
Psyr
_2589
IucA/IucC
no
0.33
14
Psyr
_0835
transcriptional regulator, TraR/DksA family
no
0.32
15
Psyr
_1615
Patatin
no
0.32
16
Psyr
_2558
hypothetical protein
no
0.32
17
Psyr
_2711
diguanylate cyclase/phosphodiesterase
no
0.31
18
Psyr
_0989
Lysine exporter protein (LYSE/YGGA)
0.60
0.31
19
Psyr
_2574
quinoprotein glucose dehydrogenase
no
0.31
20
Psyr
_3288
conserved hypothetical protein
no
0.31
Or look for
negative cofitness