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  • Top cofit genes for Psyr_2282 from Pseudomonas syringae pv. syringae B728a

    Hydrophobe/amphiphile efflux-1 HAE1
    SEED: RND efflux system, inner membrane transporter CmeB
    KEGG: hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_2283 Secretion protein HlyD 0.89 0.87
    2 Psyr_4819 conserved hypothetical protein 0.70 0.43
    3 Psyr_4009 RND efflux system, outer membrane lipoprotein, NodT 0.90 0.41
    4 Psyr_1268 extracellular solute-binding protein, family 3:SLT 0.56 0.41
    5 Psyr_0541 Small multidrug resistance protein 0.68 0.39
    6 Psyr_4208 heme catalase/peroxidase 0.44 0.37
    7 Psyr_2688 conserved hypothetical protein no 0.34
    8 Psyr_1979 tRNA-U20a,U20b-dihydrouridine synthase no 0.34
    9 Psyr_4655 hypothetical protein no 0.32
    10 Psyr_1404 Ferritin and Dps no 0.32
    11 Psyr_1078 Protein of unknown function DUF24 no 0.31
    12 Psyr_2487 Short-chain dehydrogenase/reductase SDR 0.25 0.30
    13 Psyr_1543 Peptidase M48, Ste24p 0.59 0.30
    14 Psyr_0550 Protein of unknown function UPF0227 0.50 0.29
    15 Psyr_3976 conserved hypothetical protein no 0.29
    16 Psyr_1584 Aspartyl/Asparaginyl beta-hydroxylase 0.52 0.29
    17 Psyr_2472 transcriptional regulator, MerR family 0.66 0.29
    18 Psyr_0202 transcriptional regulator, LysR family 0.31 0.29
    19 Psyr_1278 Citrate-proton symport no 0.28
    20 Psyr_1105 TonB-dependent hemoglobin/transferrin/lactoferrin receptor:TonB-dependent heme/hemoglobin receptor no 0.28

    Or look for negative cofitness