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  • Top cofit genes for Psyr_2003 from Pseudomonas syringae pv. syringae B728a

    conserved hypothetical protein
    SEED: Collagenase and related proteases

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_2205 amino acid/amide ABC transporter substrate-binding protein, HAAT family no 0.41
    2 Psyr_1957 Amino acid adenylation no 0.41
    3 Psyr_4155 Protein of unknown function DUF615 no 0.39
    4 Psyr_1323 Extensin-like, C-terminal no 0.39
    5 Psyr_2126 4-carboxymuconolactone decarboxylase 0.28 0.38
    6 Psyr_3021 Pyruvate decarboxylase:Pyruvate ferredoxin/flavodoxin oxidoreductase no 0.38
    7 Psyr_1264 hypothetical protein no 0.38
    8 Psyr_1870 protein of unknown function DUF403 no 0.38
    9 Psyr_1074 amino acid ABC transporter membrane protein 2, PAAT family no 0.37
    10 Psyr_1776 Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer no 0.36
    11 Psyr_3737 transcriptional regulator, MarR family 0.44 0.36
    12 Psyr_1051 YD repeat protein no 0.36
    13 Psyr_3748 GCN5-related N-acetyltransferase no 0.35
    14 Psyr_2134 protein of unknown function DUF903 no 0.34
    15 Psyr_2418 shikimate dehydrogenase no 0.34
    16 Psyr_3221 DegT/DnrJ/EryC1/StrS aminotransferase no 0.34
    17 Psyr_0374 Phosphorylase no 0.34
    18 Psyr_1694 Rhomboid-like protein no 0.33
    19 Psyr_4006 transcriptional regulator, TetR family 0.20 0.33
    20 Psyr_3819 Protein of unknown function DUF1349 no 0.33

    Or look for negative cofitness