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  • Top cofit genes for Psyr_1602 from Pseudomonas syringae pv. syringae B728a

    ABC transporter
    SEED: Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1)
    KEGG: putative spermidine/putrescine transport system ATP-binding protein

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_3221 DegT/DnrJ/EryC1/StrS aminotransferase 0.44 0.44
    2 Psyr_1776 Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer no 0.39
    3 Psyr_5012 conserved hypothetical protein no 0.38
    4 Psyr_4735 GTP-binding protein, HSR1-related protein no 0.38
    5 Psyr_4654 hypothetical protein no 0.38
    6 Psyr_0374 Phosphorylase 0.55 0.38
    7 Psyr_3010 nicotinamide-nucleotide adenylyltransferase, putative no 0.37
    8 Psyr_5011 Amino acid adenylation:Thioester reductase 0.72 0.36
    9 Psyr_3819 Protein of unknown function DUF1349 no 0.36
    10 Psyr_3935 Short-chain dehydrogenase/reductase SDR no 0.35
    11 Psyr_3161 Type I secretion system ATPase, PrtD 0.39 0.35
    12 Psyr_4515 hypothetical protein no 0.35
    13 Psyr_4495 Beta-lactamase 0.12 0.34
    14 Psyr_1074 amino acid ABC transporter membrane protein 2, PAAT family no 0.33
    15 Psyr_2521 conserved hypothetical protein no 0.33
    16 Psyr_0878 Phospholipase D/Transphosphatidylase no 0.32
    17 Psyr_4986 YD repeat protein 0.17 0.32
    18 Psyr_0715 pillin, putative no 0.32
    19 Psyr_0912 DnaJ domain protein no 0.32
    20 Psyr_1299 NADH:flavin oxidoreductase/NADH oxidase 0.19 0.32

    Or look for negative cofitness