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  • Top cofit genes for Psyr_1454 from Pseudomonas syringae pv. syringae B728a

    hypothetical protein
    SEED: Type IV secretory pathway, VirD4 components

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_1020 GTP cyclohydrolase I 0.42 0.36
    2 Psyr_4388 Response regulator receiver no 0.35
    3 Psyr_4130 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF 0.27 0.35
    4 Psyr_4326 type III effector HopI1 no 0.32
    5 Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE 0.46 0.32
    6 Psyr_0351 NLPA lipoprotein no 0.32
    7 Psyr_1059 alginate export porin no 0.32
    8 Psyr_1052 mannose-6-phosphate isomerase, type 2 / mannose-1-phosphate guanylyltransferase (GDP) no 0.32
    9 Psyr_0555 Protein of unknown function DUF330 0.25 0.32
    10 Psyr_4912 amino acid ABC transporter substrate-binding protein, PAAT family no 0.31
    11 Psyr_1208 type III secretion protein HrcR 0.65 0.31
    12 Psyr_1063 GDP-mannose 6-dehydrogenase no 0.31
    13 Psyr_3333 4Fe-4S ferredoxin, iron-sulfur binding:Protein of unknown function DUF224 0.51 0.30
    14 Psyr_2242 conserved hypothetical protein no 0.30
    15 Psyr_4023 conserved hypothetical protein no 0.30
    16 Psyr_1218 type III helper protein HrpK1 no 0.30
    17 Psyr_1350 site-2 protease, Metallo peptidase, MEROPS family M50B 0.53 0.29
    18 Psyr_1055 Membrane bound O-acyl transferase, MBOAT no 0.29
    19 Psyr_0130 hypothetical protein no 0.29
    20 Psyr_2609 Alpha/beta hydrolase fold protein no 0.29

    Or look for negative cofitness