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  • Top cofit genes for Psyr_1395 from Pseudomonas syringae pv. syringae B728a

    virulence
    SEED: Type IV secretory pathway, VirJ component

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_1054 alginate biosynthesis protein AlgJ 0.78 0.76
    2 Psyr_0758 beta-fructofuranosidase 0.91 0.74
    3 Psyr_1055 Membrane bound O-acyl transferase, MBOAT 0.86 0.74
    4 Psyr_0219 phosphomannomutase 0.78 0.73
    5 Psyr_4659 type III effector HopAB1 no 0.73
    6 Psyr_0508 lyase, putative 0.76 0.71
    7 Psyr_0915 NAD-dependent epimerase/dehydratase 0.75 0.71
    8 Psyr_3141 type II and III secretion system protein:NolW-like protein 0.73 0.69
    9 Psyr_1056 Poly(beta-D-mannuronate) lyase 0.87 0.66
    10 Psyr_1705 Amino acid adenylation 0.88 0.65
    11 Psyr_1060 Sel1-like repeat protein 0.74 0.64
    12 Psyr_0378 Glycosyl transferase, family 2 0.71 0.63
    13 Psyr_1053 alginate biosynthesis protein AlgF 0.75 0.62
    14 Psyr_4130 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF 0.70 0.62
    15 Psyr_4242 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal 0.40 0.62
    16 Psyr_5053 asparaginase 0.79 0.62
    17 Psyr_2995 maltooligosyl trehalose synthase no 0.61
    18 Psyr_1396 Protein of unknown function DUF470:Protein of unknown function DUF471:Protein of unknown function DUF472 0.95 0.60
    19 Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE 0.77 0.60
    20 Psyr_3150 type II secretion system protein no 0.60

    Or look for negative cofitness