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  • Top cofit genes for Psyr_1390 from Pseudomonas syringae pv. syringae B728a

    RNA-binding S4
    SEED: tRNA pseudouridine synthase A (EC 4.2.1.70)
    KEGG: ribosomal large subunit pseudouridine synthase F

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_0814 Protein of unknown function DUF124 no 0.34
    2 Psyr_3233 FMN reductase no 0.33
    3 Psyr_0042 lipoprotein, putative no 0.31
    4 Psyr_2067 ABC transporter no 0.30
    5 Psyr_2938 transcriptional regulator, LysR family no 0.30
    6 Psyr_3119 Major facilitator superfamily no 0.29
    7 Psyr_1398 lipoprotein, putative 0.39 0.28
    8 Psyr_0947 TPR repeat protein:TPR repeat protein 0.38 0.28
    9 Psyr_2300 Conserved hypothetical protein 374 no 0.27
    10 Psyr_3364 Beta-lactamase no 0.27
    11 Psyr_4887 Peptidase S41A, C-terminal protease 0.77 0.26
    12 Psyr_4879 hypothetical protein no 0.26
    13 Psyr_2886 xylose ABC transporter membrane protein no 0.26
    14 Psyr_2591 transport system permease protein no 0.26
    15 Psyr_1444 conserved hypothetical protein 0.20 0.26
    16 Psyr_0547 Conserved hypothetical protein 52 no 0.26
    17 Psyr_2869 xenobiotic compound monooxygenase, DszA family no 0.26
    18 Psyr_4961 conserved hypothetical protein no 0.26
    19 Psyr_2261 Peptidase M20:Peptidase M20 no 0.26
    20 Psyr_4912 amino acid ABC transporter substrate-binding protein, PAAT family 0.28 0.25

    Or look for negative cofitness