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  • Top cofit genes for Psyr_1220 from Pseudomonas syringae pv. syringae B728a

    type III effector HopX1
    SEED: AvrPphE

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_0040 OsmC-like protein no 0.39
    2 Psyr_4493 PAS:GGDEF no 0.34
    3 Psyr_0347 hypothetical protein no 0.34
    4 Psyr_4043 hypothetical protein no 0.33
    5 Psyr_4444 Protein of unknown function DUF6 no 0.33
    6 Psyr_2231 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase no 0.32
    7 Psyr_3631 GreA/GreB family elongation factor no 0.32
    8 Psyr_4770 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) no 0.32
    9 Psyr_4723 hypothetical protein no 0.32
    10 Psyr_3306 Glycoside hydrolase, family 5 no 0.32
    11 Psyr_1276 conserved hypothetical protein no 0.31
    12 Psyr_4339 ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase no 0.30
    13 Psyr_4023 conserved hypothetical protein no 0.30
    14 Psyr_1156 Peptidase M20A, peptidase V no 0.30
    15 Psyr_0085 conserved hypothetical protein no 0.30
    16 Psyr_0612 Nucleotidyl transferase no 0.30
    17 Psyr_2604 conserved hypothetical protein; putative membrane protein no 0.30
    18 Psyr_3719 hypothetical protein no 0.29
    19 Psyr_3727 conserved hypothetical protein no 0.29
    20 Psyr_3329 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) no 0.29

    Or look for negative cofitness