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  • Top cofit genes for Psyr_1216 from Pseudomonas syringae pv. syringae B728a

    type III secretion outer membrane protein PopN
    SEED: type III secretion protein HrpJ
    KEGG: type III secretion protein SctW

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_1200 outer-membrane type III secretion protein HrcC 0.82 0.92
    2 Psyr_1208 type III secretion protein HrcR 0.73 0.88
    3 Psyr_1205 type III secretion protein HrcU 0.74 0.88
    4 Psyr_1211 type III secretion protein HrpP no 0.88
    5 Psyr_1213 type III secretion cytoplasmic ATPase HrcN 0.89 0.88
    6 Psyr_1210 type III secretion protein HrcQa no 0.88
    7 Psyr_1195 type III secretion apparatus lipoprotein, YscJ/HrcJ family 0.67 0.87
    8 Psyr_1215 Type III secretion protein HrcV 0.87 0.87
    9 Psyr_1191 type III transcriptional regulator HrpS 0.73 0.86
    10 Psyr_1218 type III helper protein HrpK1 0.54 0.83
    11 Psyr_1217 Sigma-70 region 2:Sigma-70 region 4 no 0.81
    12 Psyr_1197 type III secretion protein HrpE no 0.80
    13 Psyr_2613 Cyclic peptide transporter 0.54 0.79
    14 Psyr_1206 type III secretion protein HrcT 0.82 0.79
    15 Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE 0.63 0.79
    16 Psyr_1190 type III transcriptional regulator HrpR 0.94 0.78
    17 Psyr_1212 type III secretion protein HrpO 0.52 0.77
    18 Psyr_2616 Amino acid adenylation 0.64 0.76
    19 Psyr_1625 2-oxo-acid dehydrogenase E1 component homodimeric type no 0.75
    20 Psyr_4130 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF 0.61 0.75

    Or look for negative cofitness