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  • Top cofit genes for Psyr_1215 from Pseudomonas syringae pv. syringae B728a

    Type III secretion protein HrcV
    SEED: Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV)
    KEGG: type III secretion protein SctV

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_1208 type III secretion protein HrcR 0.76 0.96
    2 Psyr_1191 type III transcriptional regulator HrpS no 0.92
    3 Psyr_1213 type III secretion cytoplasmic ATPase HrcN 0.92 0.91
    4 Psyr_1205 type III secretion protein HrcU 0.69 0.91
    5 Psyr_1200 outer-membrane type III secretion protein HrcC 0.85 0.91
    6 Psyr_1195 type III secretion apparatus lipoprotein, YscJ/HrcJ family 0.74 0.90
    7 Psyr_1206 type III secretion protein HrcT 0.84 0.89
    8 Psyr_1210 type III secretion protein HrcQa no 0.87
    9 Psyr_1216 type III secretion outer membrane protein PopN 0.87 0.87
    10 Psyr_1218 type III helper protein HrpK1 0.66 0.85
    11 Psyr_1211 type III secretion protein HrpP no 0.84
    12 Psyr_1190 type III transcriptional regulator HrpR 0.92 0.81
    13 Psyr_1197 type III secretion protein HrpE 0.46 0.80
    14 Psyr_2616 Amino acid adenylation 0.69 0.80
    15 Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE 0.65 0.78
    16 Psyr_1217 Sigma-70 region 2:Sigma-70 region 4 0.69 0.75
    17 Psyr_2613 Cyclic peptide transporter 0.75 0.74
    18 Psyr_4130 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF 0.69 0.74
    19 Psyr_1212 type III secretion protein HrpO 0.74 0.73
    20 Psyr_1625 2-oxo-acid dehydrogenase E1 component homodimeric type 0.71 0.71

    Or look for negative cofitness