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  • Top cofit genes for Psyr_1211 from Pseudomonas syringae pv. syringae B728a

    type III secretion protein HrpP
    SEED: type III secretion protein HrpP

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_1216 type III secretion outer membrane protein PopN no 0.88
    2 Psyr_1200 outer-membrane type III secretion protein HrcC 0.55 0.86
    3 Psyr_1208 type III secretion protein HrcR 0.59 0.85
    4 Psyr_1213 type III secretion cytoplasmic ATPase HrcN no 0.85
    5 Psyr_1218 type III helper protein HrpK1 no 0.84
    6 Psyr_1205 type III secretion protein HrcU 0.69 0.84
    7 Psyr_1215 Type III secretion protein HrcV 0.52 0.84
    8 Psyr_1210 type III secretion protein HrcQa no 0.83
    9 Psyr_1195 type III secretion apparatus lipoprotein, YscJ/HrcJ family 0.67 0.82
    10 Psyr_1191 type III transcriptional regulator HrpS 0.67 0.81
    11 Psyr_1625 2-oxo-acid dehydrogenase E1 component homodimeric type 0.53 0.79
    12 Psyr_2613 Cyclic peptide transporter 0.53 0.77
    13 Psyr_1197 type III secretion protein HrpE no 0.77
    14 Psyr_2616 Amino acid adenylation 0.55 0.76
    15 Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE 0.51 0.75
    16 Psyr_1206 type III secretion protein HrcT 0.63 0.75
    17 Psyr_1217 Sigma-70 region 2:Sigma-70 region 4 no 0.74
    18 Psyr_1350 site-2 protease, Metallo peptidase, MEROPS family M50B 0.59 0.72
    19 Psyr_4130 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF no 0.72
    20 Psyr_1196 type III secretion protein HrpD no 0.71

    Or look for negative cofitness