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  • Top cofit genes for Psyr_1063 from Pseudomonas syringae pv. syringae B728a

    GDP-mannose 6-dehydrogenase
    SEED: GDP-mannose 6-dehydrogenase (EC 1.1.1.132)
    KEGG: GDP-mannose 6-dehydrogenase

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_1058 Parallel beta-helix repeat:Carbohydrate binding and sugar hydrolysis 0.60 0.80
    2 Psyr_1053 alginate biosynthesis protein AlgF 0.59 0.78
    3 Psyr_4130 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF 0.69 0.78
    4 Psyr_1062 alginate biosynthesis protein Alg8 0.65 0.77
    5 Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE 0.69 0.77
    6 Psyr_1059 alginate export porin 0.57 0.75
    7 Psyr_1055 Membrane bound O-acyl transferase, MBOAT 0.66 0.75
    8 Psyr_1060 Sel1-like repeat protein 0.66 0.74
    9 Psyr_1206 type III secretion protein HrcT 0.63 0.74
    10 Psyr_1210 type III secretion protein HrcQa no 0.73
    11 Psyr_1057 alginate biosynthesis protein AlgX 0.65 0.72
    12 Psyr_1350 site-2 protease, Metallo peptidase, MEROPS family M50B 0.67 0.72
    13 Psyr_1061 alginate biosynthesis protein Alg44 0.56 0.69
    14 Psyr_1205 type III secretion protein HrcU 0.68 0.69
    15 Psyr_1216 type III secretion outer membrane protein PopN 0.56 0.69
    16 Psyr_0555 Protein of unknown function DUF330 0.60 0.69
    17 Psyr_1195 type III secretion apparatus lipoprotein, YscJ/HrcJ family 0.61 0.69
    18 Psyr_1213 type III secretion cytoplasmic ATPase HrcN 0.59 0.68
    19 Psyr_1200 outer-membrane type III secretion protein HrcC 0.66 0.68
    20 Psyr_0219 phosphomannomutase 0.68 0.67

    Or look for negative cofitness