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  • Top cofit genes for Psyr_1044 from Pseudomonas syringae pv. syringae B728a

    transcriptional regulator, LysR family
    SEED: LysR family transcriptional regulator QseA

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_3478 Flagellar basal body rod protein:Protein of unknown function DUF1078:Flagellar basal body FlaE no 0.78
    2 Psyr_3470 Flagellin, N-terminal no 0.76
    3 Psyr_3471 Flagellar basal body rod protein:Protein of unknown function DUF1078 no 0.75
    4 Psyr_3437 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG no 0.74
    5 Psyr_3469 Glycosyl transferase, family 2 no 0.74
    6 Psyr_3893 OmpA/MotB no 0.73
    7 Psyr_3487 flagellar protein FlgA no 0.73
    8 Psyr_3472 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase no 0.73
    9 Psyr_3447 Flagellar motor switch protein FliM no 0.73
    10 Psyr_3485 MCP methyltransferase, CheR-type no 0.72
    11 Psyr_3441 Flagellar biosynthetic protein FlhB 0.51 0.71
    12 Psyr_3474 Flagellar L-ring protein no 0.70
    13 Psyr_3464 Flagellar hook-associated protein 2, N-terminal:Flagellar hook-associated 2, C-terminal:Flagellin hook IN no 0.70
    14 Psyr_3453 flagellar protein FliJ, putative 0.50 0.69
    15 Psyr_3463 Flagellar protein FliS 0.49 0.69
    16 Psyr_1661 conserved hypothetical protein 0.44 0.68
    17 Psyr_4678 GGDEF domain protein 0.46 0.68
    18 Psyr_2138 Glycosyl transferase, family 2 no 0.67
    19 Psyr_3454 ATPase FliI/YscN no 0.66
    20 Psyr_3456 Flagellar motor switch protein FliG 0.51 0.66

    Or look for negative cofitness