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  • Top cofit genes for Psyr_1025 from Pseudomonas syringae pv. syringae B728a

    Short-chain dehydrogenase/reductase SDR
    SEED: Oxidoreductase, short chain dehydrogenase/reductase family

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_2958 extracellular solute-binding protein, family 5 0.17 0.46
    2 Psyr_2481 thiol peroxidase (atypical 2-Cys peroxiredoxin) no 0.45
    3 Psyr_1657 transcriptional regulator, TetR family no 0.44
    4 Psyr_1411 4-hydroxybenzoyl-CoA thioesterase 0.47 0.42
    5 Psyr_2619 diaminobutyrate aminotransferase apoenzyme no 0.40
    6 Psyr_1196 type III secretion protein HrpD no 0.38
    7 Psyr_2705 Helix-turn-helix motif protein no 0.38
    8 Psyr_0954 Protein of unknown function UPF0153 no 0.37
    9 Psyr_2188 Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer:CHASE3 no 0.37
    10 Psyr_2434 Carbohydrate kinase, PfkB 0.19 0.36
    11 Psyr_2836 hypothetical protein no 0.36
    12 Psyr_2614 Amino acid adenylation no 0.35
    13 Psyr_4692 ABC transporter 0.30 0.35
    14 Psyr_2497 lipoprotein, putative no 0.34
    15 Psyr_2117 conserved hypothetical protein no 0.34
    16 Psyr_3302 mannose-6-phosphate isomerase, type 2 / mannose-1-phosphate guanylyltransferase (GDP) 0.55 0.34
    17 Psyr_1705 Amino acid adenylation no 0.34
    18 Psyr_3912 ATP-binding region, ATPase-like:Histidine kinase A, N-terminal no 0.34
    19 Psyr_2427 gamma-glutamylputrescine oxidase no 0.34
    20 Psyr_0350 ABC transporter 0.22 0.34

    Or look for negative cofitness