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Cofit
Top cofit genes for Psyr_0939 from
Pseudomonas syringae pv. syringae B728a
CDS
Rank
Hit
Name
Description
Conserved?
Cofitness
1
Psyr
_2279
conserved hypothetical protein
no
0.39
2
Psyr
_0955
membrane protein, putative
no
0.38
3
Psyr
_4183
protein translocase subunit secG
no
0.38
4
Psyr
_2476
Exodeoxyribonuclease III
no
0.37
5
Psyr
_2689
DegT/DnrJ/EryC1/StrS aminotransferase
no
0.36
6
Psyr
_1197
type III secretion protein HrpE
no
0.36
7
Psyr
_1747
ATP-dependent Clp protease proteolytic subunit ClpP
no
0.36
8
Psyr
_3916
methionine synthase (B12-independent)
no
0.34
9
Psyr
_1520
SNF2-related:Helicase, C-terminal
no
0.34
10
Psyr
_0199
Glutathione-dependent formaldehyde-activating, GFA
no
0.33
11
Psyr
_2266
Binding-protein-dependent transport systems inner membrane component
no
0.31
12
Psyr
_2726
trans-feruloyl-CoA synthase
no
0.30
13
Psyr
_3746
hypothetical protein
no
0.30
14
Psyr
_1312
transcriptional regulator, TetR family
no
0.30
15
Psyr
_4659
type III effector HopAB1
no
0.30
16
Psyr
_1213
type III secretion cytoplasmic ATPase HrcN
no
0.30
17
Psyr
_2868
Response regulator receiver:Transcriptional regulatory protein, C-terminal
no
0.29
18
Psyr
_2265
Binding-protein-dependent transport systems inner membrane component
no
0.29
19
Psyr
_0227
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
no
0.29
20
Psyr
_1096
glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit
no
0.29
Or look for
negative cofitness