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  • Top cofit genes for Psyr_0817 from Pseudomonas syringae pv. syringae B728a

    N-acetylmuramoyl-L-alanine amidase, family 2
    SEED: N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD
    KEGG: AmpD protein

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_4235 extracellular solute-binding protein, family 5 0.53 0.38
    2 Psyr_3324 transcriptional regulator, TetR family 0.36 0.37
    3 Psyr_4237 outer membrane porin 0.21 0.36
    4 Psyr_4822 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) 0.32 0.36
    5 Psyr_2772 Fibronectin, type III no 0.35
    6 Psyr_1316 OmpA/MotB no 0.35
    7 Psyr_4623 Aminoglycoside phosphotransferase 0.94 0.34
    8 Psyr_4809 conserved hypothetical protein no 0.34
    9 Psyr_4207 GCN5-related N-acetyltransferase 0.35 0.33
    10 Psyr_4448 Ferritin and Dps no 0.33
    11 Psyr_2771 conserved domain protein no 0.33
    12 Psyr_3167 Citrate-proton symport no 0.33
    13 Psyr_4078 AmpG-related permease 0.96 0.32
    14 Psyr_4271 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K no 0.32
    15 Psyr_1851 conserved hypothetical protein no 0.32
    16 Psyr_2773 hypothetical protein no 0.32
    17 Psyr_0054 alginate regulatory protein AlgR3 no 0.32
    18 Psyr_2825 DNA methylase N-4/N-6 no 0.31
    19 Psyr_0127 Glutathione-dependent formaldehyde-activating, GFA no 0.31
    20 Psyr_3066 conserved hypothetical protein no 0.31

    Or look for negative cofitness