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  • Top cofit genes for Psyr_0816 from Pseudomonas syringae pv. syringae B728a

    conserved hypothetical protein
    SEED: Thymidine phosphorylase (EC 2.4.2.4)

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_3963 conserved hypothetical protein 0.67 0.54
    2 Psyr_4770 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 0.68 0.46
    3 Psyr_3306 Glycoside hydrolase, family 5 no 0.45
    4 Psyr_3733 Outer membrane autotransporter barrel no 0.44
    5 Psyr_0478 pilus retraction ATPase PilT 0.35 0.43
    6 Psyr_3491 Major facilitator superfamily no 0.41
    7 Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE 0.58 0.40
    8 Psyr_4130 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF 0.36 0.40
    9 Psyr_1212 type III secretion protein HrpO 0.51 0.39
    10 Psyr_3150 type II secretion system protein no 0.38
    11 Psyr_2431 Zinc-containing alcohol dehydrogenase superfamily 0.24 0.38
    12 Psyr_4493 PAS:GGDEF no 0.36
    13 Psyr_1564 Protein of unknown function DUF709 no 0.36
    14 Psyr_4998 hypothetical protein no 0.36
    15 Psyr_0918 ABC transporter no 0.35
    16 Psyr_3329 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) no 0.35
    17 Psyr_1215 Type III secretion protein HrcV 0.55 0.35
    18 Psyr_0356 L-cystine ABC transporter ATP-binding protein / Diaminopimelate ABC transporter ATP-binding protein no 0.35
    19 Psyr_3368 Protein of unknown function DUF451 no 0.35
    20 Psyr_1206 type III secretion protein HrcT 0.54 0.35

    Or look for negative cofitness