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  • Top cofit genes for Psyr_0719 from Pseudomonas syringae pv. syringae B728a

    type IV pilus-associated protein, putative
    SEED: Type IV fimbrial biogenesis protein PilY1
    KEGG: type IV pilus assembly protein PilY1

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_0717 type IV pilus assembly protein PilW 0.79 0.69
    2 Psyr_0716 type IV pilus assembly protein PilV 0.81 0.61
    3 Psyr_3441 Flagellar biosynthetic protein FlhB 0.29 0.57
    4 Psyr_3437 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG 0.33 0.57
    5 Psyr_3478 Flagellar basal body rod protein:Protein of unknown function DUF1078:Flagellar basal body FlaE 0.41 0.55
    6 Psyr_0720 Fimbrial protein pilin 0.87 0.53
    7 Psyr_3461 Helix-turn-helix, Fis-type 0.46 0.52
    8 Psyr_3472 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase no 0.52
    9 Psyr_3453 flagellar protein FliJ, putative no 0.52
    10 Psyr_3454 ATPase FliI/YscN no 0.51
    11 Psyr_3474 Flagellar L-ring protein 0.32 0.50
    12 Psyr_3440 Flagellar biosynthesis protein FlhA 0.44 0.50
    13 Psyr_3447 Flagellar motor switch protein FliM 0.47 0.50
    14 Psyr_3470 Flagellin, N-terminal no 0.49
    15 Psyr_3443 Flagellar biosynthesis protein FliQ no 0.49
    16 Psyr_3455 Flagellar assembly protein FliH no 0.49
    17 Psyr_3445 Flagellar biosynthesis protein, FliO no 0.48
    18 Psyr_1654 Type IV pilus assembly PilZ 0.72 0.48
    19 Psyr_0799 Fimbrial protein pilin no 0.48
    20 Psyr_3442 Flagellar biosynthesis protein FliR no 0.48

    Or look for negative cofitness