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  • Top cofit genes for Psyr_0579 from Pseudomonas syringae pv. syringae B728a

    RNAse R
    SEED: 3'-to-5' exoribonuclease RNase R
    KEGG: ribonuclease R

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_3856 Helicase c2 0.38 0.49
    2 Psyr_3458 Flagellar hook-basal body complex protein FliE 0.37 0.46
    3 Psyr_1410 Holliday junction DNA helicase RuvB 0.43 0.44
    4 Psyr_1809 Polysaccharide deacetylase 0.53 0.44
    5 Psyr_1249 histidyl-tRNA synthetase no 0.42
    6 Psyr_4078 AmpG-related permease 0.32 0.42
    7 Psyr_0201 ATP-dependent DNA helicase RecG 0.87 0.42
    8 Psyr_1056 Poly(beta-D-mannuronate) lyase 0.55 0.42
    9 Psyr_5065 ATP-dependent DNA helicase UvrD 0.37 0.41
    10 Psyr_3485 MCP methyltransferase, CheR-type no 0.40
    11 Psyr_0167 hypothetical protein no 0.40
    12 Psyr_4623 Aminoglycoside phosphotransferase 0.73 0.40
    13 Psyr_1411 4-hydroxybenzoyl-CoA thioesterase no 0.40
    14 Psyr_0111 hypothetical protein no 0.39
    15 Psyr_1408 Holliday junction endonuclease RuvC no 0.39
    16 Psyr_0776 monosaccharide ABC transporter substrate-binding protein, CUT2 family no 0.39
    17 Psyr_2976 Phage integrase:Phage integrase, N-terminal SAM-like protein no 0.39
    18 Psyr_4408 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase 0.49 0.38
    19 Psyr_0335 membrane protein, putative no 0.38
    20 Psyr_1716 conserved hypothetical protein 0.32 0.38

    Or look for negative cofitness