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  • Top cofit genes for Psyr_0543 from Pseudomonas syringae pv. syringae B728a

    Type I secretion outer membrane protein, TolC
    SEED: Type I secretion outer membrane protein, TolC precursor
    KEGG: outer membrane channel protein TolC

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_3306 Glycoside hydrolase, family 5 no 0.45
    2 Psyr_1366 transcriptional regulator, LysR family no 0.40
    3 Psyr_3770 Propeptide, PepSY amd peptidase M4 no 0.39
    4 Psyr_0345 Secretion protein HlyD 0.84 0.39
    5 Psyr_2829 conserved hypothetical protein no 0.38
    6 Psyr_2733 Short-chain dehydrogenase/reductase SDR no 0.38
    7 Psyr_4770 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) no 0.38
    8 Psyr_3945 secreted protein-like protein no 0.37
    9 Psyr_1328 glycerol-3-phosphate acyltransferase 0.13 0.37
    10 Psyr_0628 Ethanolamine ammonia-lyase heavy chain 0.71 0.37
    11 Psyr_0855 conserved hypothetical protein no 0.37
    12 Psyr_3791 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal 0.81 0.36
    13 Psyr_2777 NLP/P60 0.38 0.36
    14 Psyr_3963 conserved hypothetical protein no 0.36
    15 Psyr_3527 glutathione-independent formaldehyde dehydrogenase no 0.35
    16 Psyr_1708 L-arabinonate dehydratase 0.64 0.35
    17 Psyr_0354 Acyl-CoA dehydrogenase, C-terminal no 0.35
    18 Psyr_1822 MscS Mechanosensitive ion channel no 0.35
    19 Psyr_5024 conserved hypothetical protein 0.42 0.34
    20 Psyr_0020 Peptidoglycan-binding LysM 0.87 0.34

    Or look for negative cofitness