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  • Top cofit genes for Psyr_0202 from Pseudomonas syringae pv. syringae B728a

    transcriptional regulator, LysR family
    SEED: Hydrogen peroxide-inducible genes activator
    KEGG: LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_1404 Ferritin and Dps 0.81 0.52
    2 Psyr_4009 RND efflux system, outer membrane lipoprotein, NodT 0.51 0.50
    3 Psyr_4008 Hydrophobe/amphiphile efflux-1 HAE1 0.84 0.48
    4 Psyr_4007 Secretion protein HlyD 0.80 0.47
    5 Psyr_0947 TPR repeat protein:TPR repeat protein 0.34 0.44
    6 Psyr_0550 Protein of unknown function UPF0227 0.51 0.39
    7 Psyr_0525 Lipopolysaccharide kinase 0.52 0.39
    8 Psyr_1599 C-terminal processing peptidase-1, Serine peptidase, MEROPS family S41A 0.55 0.38
    9 Psyr_4989 hypothetical protein no 0.38
    10 Psyr_0259 Osmolarity sensor protein envZ 0.75 0.38
    11 Psyr_4887 Peptidase S41A, C-terminal protease 0.34 0.37
    12 Psyr_4381 arginine decarboxylase 0.94 0.37
    13 Psyr_3494 hypothetical protein no 0.36
    14 Psyr_1584 Aspartyl/Asparaginyl beta-hydroxylase 0.42 0.35
    15 Psyr_2855 methionine synthase (B12-independent) no 0.35
    16 Psyr_0603 N-acylglucosamine 2-epimerase 0.44 0.35
    17 Psyr_2087 aconitase / 2-methylcitrate dehydratase (trans-methylaconitate-forming) 0.38 0.35
    18 Psyr_1921 Alpha/beta hydrolase fold protein no 0.35
    19 Psyr_4834 histidine:proton symporter, AAT family 0.39 0.34
    20 Psyr_1047 conserved hypothetical protein no 0.34

    Or look for negative cofitness