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  • Top cofit genes for Psyr_0140 from Pseudomonas syringae pv. syringae B728a

    Binding-protein-dependent transport systems inner membrane component
    SEED: Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
    KEGG: microcin C transport system permease protein

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_3829 Leucine-rich repeat protein 0.34 0.42
    2 Psyr_2303 UbiA prenyltransferase no 0.41
    3 Psyr_3899 Molybdopterin oxidoreductase:molybdopterin dinucleotide-binding region no 0.41
    4 Psyr_0595 Nicotinate phosphoribosyltransferase no 0.40
    5 Psyr_3843 diguanylate cyclase/phosphodiesterase no 0.37
    6 Psyr_3459 Helix-turn-helix, Fis-type no 0.37
    7 Psyr_3300 Conserved hypothetical protein 147 no 0.36
    8 Psyr_1524 conserved hypothetical protein no 0.36
    9 Psyr_0981 conserved hypothetical protein no 0.36
    10 Psyr_3420 conserved hypothetical protein no 0.35
    11 Psyr_4336 ribosomal large subunit pseudouridine synthase E no 0.34
    12 Psyr_0266 GGDEF domain protein no 0.34
    13 Psyr_4706 Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer no 0.34
    14 Psyr_0176 conserved hypothetical protein 0.36 0.34
    15 Psyr_3224 Low molecular weight phosphotyrosine protein phosphatase no 0.33
    16 Psyr_0095 transposase, IS4 family no 0.33
    17 Psyr_3852 lipoprotein SlyB, putative no 0.33
    18 Psyr_3929 conserved hypothetical protein no 0.32
    19 Psyr_3621 conserved hypothetical protein no 0.32
    20 Psyr_2934 NADH:flavin oxidoreductase/NADH oxidase no 0.32

    Or look for negative cofitness