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  • Top cofit genes for Psyr_0077 from Pseudomonas syringae pv. syringae B728a

    sigma54 specific transcriptional regulator, Fis family
    SEED: Sigma-54 dependent transcriptional regulator

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_2401 extracellular solute-binding protein, family 1 no 0.40
    2 Psyr_1793 Amino acid adenylation no 0.39
    3 Psyr_4076 conserved hypothetical protein no 0.36
    4 Psyr_2919 conserved hypothetical protein no 0.36
    5 Psyr_1090 DNA polymerase III, chi subunit no 0.36
    6 Psyr_1537 Amidase no 0.36
    7 Psyr_4277 Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region no 0.36
    8 Psyr_4488 L-fucose permease no 0.35
    9 Psyr_0293 Polyphosphate kinase no 0.35
    10 Psyr_2446 MCP methyltransferase, CheR-type no 0.35
    11 Psyr_3230 Glycosyl transferase, group 1 no 0.34
    12 Psyr_4798 conserved hypothetical protein no 0.34
    13 Psyr_0232 gamma-glutamylputrescine oxidase no 0.34
    14 Psyr_4429 ABC transporter no 0.33
    15 Psyr_5038 phosphate ABC transporter ATP-binding protein, PhoT family 0.24 0.33
    16 Psyr_4034 hypothetical protein no 0.33
    17 Psyr_0891 anti-ECFsigma factor, ChrR no 0.33
    18 Psyr_2402 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II no 0.33
    19 Psyr_2452 Enoyl-CoA hydratase/isomerase no 0.32
    20 Psyr_3995 Helix-turn-helix, Fis-type 0.47 0.32

    Or look for negative cofitness