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  • Top cofit genes for Psyr_0003 from Pseudomonas syringae pv. syringae B728a

    DNA replication and repair protein RecF
    SEED: DNA recombination and repair protein RecF
    KEGG: DNA replication and repair protein RecF

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_2896 Excinuclease ABC subunit C 0.93 0.77
    2 Psyr_1974 Excinuclease ABC subunit B 0.94 0.73
    3 Psyr_4520 Excinuclease ABC subunit A 0.90 0.68
    4 Psyr_3396 DNA replication and repair protein RecR 0.95 0.66
    5 Psyr_3949 DNA replication and repair protein RecO 0.97 0.65
    6 Psyr_3738 ATP-dependent DNA helicase RecQ 0.93 0.57
    7 Psyr_0201 ATP-dependent DNA helicase RecG 0.90 0.51
    8 Psyr_4197 DNA replication and repair protein RecN 0.83 0.45
    9 Psyr_2913 transcriptional regulator, LysR family 0.45 0.42
    10 Psyr_0185 tyrosine recombinase XerC subunit 0.74 0.38
    11 Psyr_3876 amino acid ABC transporter membrane protein 2, PAAT family no 0.37
    12 Psyr_1650 aminodeoxychorismate lyase apoprotein 0.63 0.37
    13 Psyr_2080 aminodeoxychorismate synthase, subunit I 0.49 0.36
    14 Psyr_4281 cytochrome bd quinol oxidase subunit 2 apoprotein 0.67 0.36
    15 Psyr_1286 tyrosine recombinase XerD subunit 0.79 0.34
    16 Psyr_2087 aconitase / 2-methylcitrate dehydratase (trans-methylaconitate-forming) no 0.33
    17 Psyr_0393 Protein of unknown function DUF971 0.54 0.33
    18 Psyr_2603 Secretion protein HlyD no 0.33
    19 Psyr_5065 ATP-dependent DNA helicase UvrD 0.86 0.32
    20 Psyr_3008 Undecaprenyl-diphosphatase 0.51 0.31

    Or look for negative cofitness